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Frequently Asked Questions: Project Management
… by Science Program.  … The majority of JGI projects come from the user community. Find out about JGI’s calls for … https://signon.jgi.doe.gov . This account can then be used to submit proposals, sample and project metadata, and to … IMG/M   (citation: https://doi.org/10.1093/nar/gkaa939 Fungi: Mycocosm (citation: …
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Alignathon: a competitive assessment of whole-genome alignment methods
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those …
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Genomics of wood-degrading fungi
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Metabolic Modeling of Fungi
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria … for the production of  clean energy . Summary Arbuscular mycorrhizal fungi, the most widespread type of mycorrhizal … effects of climate change. The team’s study used samples from the area immediately surrounding AMF’s long filaments, …
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Products
… the product and deliverables as well as target cycle times from sample receipt to completion of standard analysis.  Raw data is provided … by physical separation of a biologically relevant unit from a microbial community, such as a microcolony, microbial …
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On the origin of bird’s nest fungi: Phylogenomic analyses of fungi in the Nidulariaceae (Agaricales, Basidiomycota)
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became … techniques, the platform delivers rich metabolite profiles from diverse biological and environmental samples in support … BP, Olson HM, Purvine SO, Salamov A, et al. Anaerobic gut fungi are an untapped reservoir of natural products. Proc …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once … data sets of RNA sequences (metatranscriptomes) generated from diverse environmental samples around the world, … for sequencing at the JGI cannot be overstated. Their cooperation and support, he said, and in several cases, …
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Bioactive exometabolites drive maintenance competition in simple bacterial communities.
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Biology of Fungi and Their Bacterial Endosymbionts
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