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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … repository of 52,515 microbial draft genomes generated from environmental samples around the world, expanding the … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and the  DOE …
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Silver age of GOLD introduces new features
… 25 years ago, the  Genomes OnLine Database has matured from six projects on a spreadsheet into a flagship  genomic metadata repository, making curated … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), but also those …
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Label-free structural imaging of plant roots and microbes using third-harmonic generation microscopy
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Plasmid Copy Number Engineering Accelerates Fungal Polyketide Discovery upon Unnatural Polyketide Biosynthesis
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JGI Early Career Researchers Featured in mSystems Special Issue
… head Emiley Eloe-Fadrosh outline more targeted approaches to reconstruct individual microbes in an environmental … specific metabolic processes. A third approach steps away from reconstructing genomes directly from the environment … Research and Development (LDRD) Program at Lawrence Berkeley National Laboratory (Berkeley Lab). JGI is a DOE …
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Sequencing Technologies & Products
… Group is well-integrated across JGI departments to ensure a robust offering of sequencing capabilities and products to our users. This includes scaling the technologies and … collaborations with Science Programs and Operations teams to enable the JGI’s focus on expanding molecular …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… featured speakers who shared a look back at the JGI’s history, from its beginnings in the sequencing for the Human Genome … to include resources from Lawrence Livermore and Lawrence Berkeley National Labs. Patrinos shared vivid memories in …
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Fungal Friends or Foes in Plant Roots
… fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their analysis identified … boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office building, its … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Their findings …
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OpenMSI Arrayed Analysis Toolkit: Analyzing Spatially Defined Samples Using Mass Spectrometry Imaging
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Arabidopsis Root Microbiome Microfluidic (ARMM) Device for Imaging Bacterial Colonization and Morphogenesis of Arabidopsis Roots
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… oust resident tiny algae. The cold polar oceans give rise to some of the largest food webs on Earth. And at their base … photosynthesizing organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory — with a desire to understand …
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The More the Merrier: Making the Case for Plant Pan-genomes
… abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two genome copies, one from each parent. Having three or more genome copies from … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), relied on a …
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