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Exploring Phages at JGI
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Frederik Schulz
Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His … University of Vienna (Austria) … Krinos et al. 2024. Time-series metagenomics reveals changing protistan … a temperate dimictic lake. Microbiome . Camargo A. et al. 2023. Identification of mobile genetic elements with …
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Secondary Metabolites Program
… of cell-free based expression platforms: Only 10-20% of BGCs are expressed under standard laboratory …
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Three Join the JGI User Executive Committee
… been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve … Greenham stepped down at the end of her term. In late 2023, the JGI launched a solicitation for nominations for …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… to date.  This summer internship program, which began in 2014, pairs undergraduate and graduate students from UC … with each intern’s interests or educational goals.  This year’s internship program was remote in its entirety due to … of our work,” said Nigel Mouncey, JGI Director. “This year is unlike any other year, but we’ve had another …
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iPHoP: A Matchmaker for Phages and their Hosts
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… metagenomic sequencing and single-cell sequencing. For years, extracting single cells and then amplifying their DNA … As previously mentioned, it’s a method that’s been used for years but in most cases, the majority of the cell’s genome … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …
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Graduate Students Get Thesis Research Opportunity at the JGI
Twice a year, the DOE Office of Science Graduate Student Research … of the latest SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship … microbiomes. Tringe was also Kaze’s mentor during her 2018 internship, in which she explored anthropogenic impacts …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, … any kind of biomass breakdown. They’ve spent millions of years evolving tactics against potential threats. “Because …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) … in the field. By having transcriptomics data across 2 years, as well as a second field trial (which will include a … see this  Metabolomics Data Analysis – Tips from Users page.  Q:  Is the metabolic study able to build a profile …
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Work With the JGI! Tips for a Winning CSP Proposal
… related to energy and the environment several times a year. A few proposal calls have deadlines coming up – in …
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