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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … RNA Polymerase (RdRP), necessary for replicating the RNA genome replication, detecting it has been a challenge. … from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into many more samples and …
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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions
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A Community Resource for Secondary Metabolite Researchers
… over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … Summary Over the years several secondary metabolites databases have been made available to the research … data.   The SMC ( smc.jgi.doe.gov ) is designed with two main objectives. First and foremost, it is a BGC …
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User Programs
Letters of Intent and must use a variety of capabilities at two or more user facilities. Proposals must be preceded by …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … , and the  Joint BioEnergy Institute —have expanded the network of common gardens and are exploring improvements to switchgrass through more targeted genome …
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Natural Prodcast Episode 2: The Primer, Part 2
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … and you can see that different Frankia have different size genomes depending on what kinds of plants, and what kinds of … a podcast produced by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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I-Min (Amy) Chen
… data management infrastructure of the Integrated Microbial Genomes (IMG) family of systems. Before joining LBNL in 2006, she was … et al. IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into … they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy … common ancestor between Archaea and Eukarya.   One genome, two metabolic pathways “Up to this point, most phylogenomic …
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User Executive Committee Charter
… has been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Terms are 3 years and members can serve no more than two consecutive terms. A Chair and Vice-Chair will be …
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located …
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A tale of two codes
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
Biotechnology and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Berkeley National Laboratory (Berkeley Lab), generated genome sequences for nearly 600 green millet plants and … the genomes at HudsonAlpha. Sujan Mamidi and Adam Healey, two of the co-first authors, led the data analyses and …
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