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Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
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CSP Functional Genomics
… The CSP Functional Genomics call is to enable users to perform state-of-the-art functional genomics research and to … function.  The emphasis is on projects leveraging JGI’s Biodesign and ‘omics capabilities to enhance … and analysis will be provided for free to the PI by the Department of Energy’s funding of the JGI. There is …
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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025)
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DOE Metrics
…     2,208     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational … Quarter Total Bases (Billions) Total Bases (Billions) by Platform Operating Hours* Goal  Actual Total*   Actual % …
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Four principles to establish a universal virus taxonomy
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… she added that phenazines are “keystone metabolites,” and by understanding what these metabolites do in nature and … to assess scope of the virosphere Keynote Talk Title : “Redefining Virus Macroevolution” Edward Holmes is an evolutionary … address some of the most pressing challenges of our time. For more information, please visit  …
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Virus species names have been standardized; virus names remain unchanged
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Natural Prodcast Episode 11: Marnix Medema
… home. Or actually not my room, it’s the room of my little baby daughter, who inherited this room from her sister. And it … take the 100, 200 most important protein domains that are defining for biosynthetic pathways and let’s split these … and good assembly. They were able to assemble a really high quality metagenome of the endosphere microbial communities …
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The JGI Data Portal: Improving User Experience
… The human-centered, agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … Over its 23-year history, JGI has produced more than 13 petabytes of data, accessible through the Genome Portal. “The … address some of the most pressing challenges of our time. For more information, please visit  …
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Towards a genome-based virus taxonomy
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Changes to virus taxonomy and the ICTV Statutes ratified by the International Committee on Taxonomy of Viruses (2024)
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Virus taxonomy proposal summaries: a searchable and citable resource to disseminate virus taxonomy advances
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