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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are … to improving crop yields and a better understanding of the roles viruses and their host microbes play in nutrient …
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Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium
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Metabolomics
… functional genome annotation, improves understanding of the role small molecules play in diverse biological systems, … light on nutrient cycling, and leads to the discovery of new molecules and pathways. The JGI Metabolomics Platform delivers rich metabolite …
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Host genotype controls ecological change in the leaf fungal microbiome
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2024 Progress Report
… (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data … of a unique cyanobacterial protein and understand its role in photosynthesis. In collaboration with Berkeley Lab … initiation and progress calls, outreach activities and hosting visiting scientists at all stages of their careers. …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … countries. (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community … of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would complement these …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A … This first paper integrating multi-omics data from this JGI fungal ENCODE proposal was  recently published in the  … a Joint Genome Institute Community Science Program grant (CSP 982), and funds from the Fred E. Dickinson Chair of Wood …
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User Advisory Committees
… of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values, … operations and scientific relevance and quality. … The Fungal & Algal Advisory Committee is chartered to offer … Committee … DNA Synthesis Science User Advisory Committee … Fungal & Algal Program User Advisory Committee … Informatics …
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2021 Progress Report
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… research into microbial communities — from freshwater estuaries reshaped by dam removal to Antarctica’s … of the innovative research  being proposed by this year’s CSP investigators,” said Tanja Woyke, Deputy Director of … including one previous New Investigator awardee.  The CSP Annual call is focused on large-scale genomic science …
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A plant host, Nicotiana benthamiana, enables the production and study of fungal lignin-degrading enzymes
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Ancient Algae Reveal Secrets of Plant Evolution
… , scientists have enhanced our understanding of how early plants transitioned from water to land. Key gene … the Joint Genome Institute Community Science Program (CSP), the United States Department of Agriculture (USDA) … Council for funding under the European Union’s Horizon 2020 research and innovation program (grant agreement no. …
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