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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential … studied what happens to the tree’s physical traits and gene expression when the fungus is present. The Impact Black … 01 to F. Martin), JGI Community sequencing program project (CSP570, DE-AC02-05CH11231), and National Science Foundation …
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From Competition to Cooperation
… By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been … to white rot fungi. Additionally, some of the saprotrophic genes found in the mycorrhizal species, such as nutrient … starting with the first mycorrhizal genome sequence generated by the JGI more than a decade ago. Having these …
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Toward a Standards-Compliant Genomic and Metagenomic Publication Record
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A roadmap for equitable reuse of public microbiome data
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Evolution of a Fungal Gene Expression Regulator
… the DNA bases themselves can also be modified. The best-known example of a modified DNA base is a methylation of the … that unlike most flowering plants and animals, fungi lack gene body methylation. The analysis revealed that 5mC in … – similar to the MAC clusters for 6mA), rather than in genes, which suggests that 5mC may play a role in genome …
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Natural Prodcast Episode 7: Ben Shen
… and scientists of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s … technology to help access complicated natural product gene clusters, and we’re all really excited about that, and … basically – so the drug discovery you can – to the general public, there’s two major – if I have to think about a …
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Who We Are
… Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 … location at the IGB fosters team science and collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    …
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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … archaea by 44%, is now available and  described November 9, 2020 in  Nature Biotechnology . Known as the GEM (Genomes … gene clusters (BGCs), increasing these BGCs in IMG/ABC (Atlas of Biosynthetic Gene Clusters) by 31%. ( Listen to …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting researchers to submit white papers to the … the data had driven his lab’s focus on guide RNA library generation and development and its applications. “I moved to … described in this webinar only offered through the CSP Functional Genomics call? A(nswer): It’s also possible …
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Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus
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Co‐catabolism of arginine and succinate drives symbiotic nitrogen fixation
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Inorganic nitrogen availability alters Eucalyptus grandis receptivity to the ectomycorrhizal fungus Pisolithus albus but not symbiotic nitrogen transfer
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