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You Can Move, But You Can’t Hide
… develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The Science … software was created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the … into Earth’s ecosystems, researchers must examine the interactions that happen between tiny organisms (microbes) …
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Emiley Eloe-Fadrosh
She conducted her postdoctoral training in human microbiome research at the Institute for Genome Sciences at … science. Rev. Microbiol. 18:313-314. Roux S, et al. 2019. Cryptic inoviruses are pervasive in bacteria and … biomes. Nature Microbiol. 4: 1895-1906. Roux S, et al. 2019. Minimum information about an uncultivated virus genome …
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Applying Viral Genomics Expertise to Understanding the Human Virome
Human Virome Program .  Nikos Kyrpides , head of the JGI’s  Microbiome Data Science , leads one project with JGI … viruses are likely to infect, and (iii) identifying the genetic traits of the viruses to better understand their … for one field of research can be harnessed elsewhere. In a  2019 paper , the team applied computational methods and …
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Chapter Five The Sphagnum Genome Project A New Model for Ecological and Evolutionary Genomics
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Uncovering Novel Genomes from Earth’s Microbiomes
Biotechnology . Known as the GEM (Genomes from Earth’s Microbiomes) catalog, this work results from a collaboration … first author and research scientist in Nikos Kyrpides’  Microbiome Data Science group. “What makes this study really … available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) platform. Eloe-Fadrosh noted that it was …
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Newly identified sex chromosomes in the Sphagnum (peat moss) genome alter carbon sequestration and ecosystem dynamics
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Divergent selection and climate adaptation fuel genomic differentiation between sister species of Sphagnum (peat moss).
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Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture
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Axel Visel
… genomes, which led to the discovery of thousands of genetic switches implicated in developmental and disease … and implementation of scientific policy, engaging in interactions with the scientific community at large. … 2021 … Medical Research Council (UK),  Nature, Cell , Nature Genetics , Nature Methods ,  Genome Research (Editorial …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … have also harnessed CRAGE to create a plant-fertilizing microbiome. In work  reported in  Applied and Environmental … bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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River microbiomes from around the world: Kelly Wrighton
… have a massive undertaking: sequencing the world’s river microbiomes. And they’re using team science to do it.   …
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Mapping the microbiome milieu
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