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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at … was tested on a number of plants, including  genomes of cotton lineages and the  oilseed crop false flax – genomes … specific procedure.” The rapport they built during this project and others (including the dissertation that preceded …
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The Chlamydomonas Genome Project, version 6: reference assemblies for mating type plus and minus strains reveal extensive structural mutation in the laboratory.
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Natural Prodcast Episode 13: Francisco Barona Goméz
… DAN UDWARY: You’re listening to the Department of Energy Joint Genome Institute’s … is an antifungal that will actually protect the fungal farms from other fungus that want to take advantage of that … in partnering with us, we want to hear from you. We have projects in genome sequencing, DNA synthesis, …
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Natural Prodcast Episode 23: Aaron Puri
… for another episode of Natural Prodcast. Right now I’m working on this the afternoon of the day I’m due to release it, … in terms of their natural products chemistry, and he has a project with the JGI to synthesize the genes for and explore … them? Or can you move the genes and heterologously express them? Is there like a great host that you could use if …
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Frequently Asked Questions: Proposal Submission
… submission process. You can review successful letters of intent and submissions at the bottom of the page.  … Review the list of open calls ; click on the call link to see specific details including project types supported, sample/capacity limits, and … The CSP and FICUS calls are open to both domestic and international applicants from any institution type and at …
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Natural Prodcast Episode 1: The Primer, Part 1
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … one of the one of the fun things that I hope that I can express today is why secondary metabolism is interesting and … in partnering with us, we want to hear from you! We have projects in genome sequencing, DNA synthesis, …
Learn more
Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational … After successful completion of the Human Genome Project, Professor Dr. Rokhsar ’s team has continued to … AB in Physics, Princeton University, NJ MS in Theoretical Physics, Cornell …
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad community of scientists and engineers to leverage our data to develop new algorithms, models and tools in support of DOE mission priorities. Data discoverability … data, open to all researchers. Book a session via the appointment calendar for technical help, feedback or a guided …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) … and multidisciplinary nature of DOE mission science projects, this initiative aims to encourage innovative … and selection processes, making it difficult to propose projects that truly integrated the capabilities of more than …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… right. Welcome back to Natural Prodcast. I did it. I’m keeping to my schedule. This should be coming out on the first … pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … biosynthetic gene clusters. Specifically, these are Tet repressors that oftentimes turn off these biosynthetic gene …
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An Integrated Dataset to Understand Ecosystem Interaction
… yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar trees and their … work and how healthy they are, a recent data set  outlined in  Scientific Data connects molecular features to large … ) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… of Natural Prodcast. A little bit of a bonus episode, since I’m off schedule, but this is an important one that … DAN UDWARY: Nothing to be sorry about. Yeah, no, your project was really cool. The vanadium haloperoxidases are … or I tried this knock-on. I tried these promoters to express this natural product cluster. It just didn’t work. And …
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