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Natural Prodcast Episode 7: Ben Shen
… of secondary metabolism.  DAN: Hello, and welcome back for Episode 7 of the Natural Prodcast. It’s been about a … tweaks, I think we’ll be on a pretty regular schedule for a while. Moving forward, I’m hoping to get a new one out … so everybody, readers of the library, can come to our databases and look for the specific information they are …
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Viruses Reprogram Cells into Different Virocells
Microbial cells infected by viruses undergo metabolic reprogramming. The Science If it … it no longer looks or quacks like one, is it still a duck? For a team led by researchers from The Ohio State University … on the global nutrient cycles regulated by their hosts. For example, microbes that capture and store carbon in the …
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Partners
… has a long-term partnership with the HudsonAlpha Institute for Biotechnology for our Plant Program, and is further … Energy Research Scientific Computing Center (NERSC) and data infrastructure projects—the DOE Systems Biology … (NMDC)—to provide access to datasets, workflows, and tools to seamlessly expand data functionality. Close …
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Quality MAGnified
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Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data
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Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The … on the effective management and strategic objectives for the JGI’s data science, informatics and information technology (IT) …
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Natural Prodcast Episode 22: Alison Narayan
… the series of interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural … so starting from some of the enzymes that we had the most data on and knew the most about, working with my … I’m so excited about my lab’s robot is that it gives us a tool to help us– DAN UDWARY: You can generate that data. …
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Nikos Kyrpides
Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became … S, et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. Nayfach S, et al. (2021) CheckV assesses the quality and completeness of …
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Protocols
… protocols provided by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA … can be found here . DNA Extraction Protocols: … Tips for High Molecular Weight DNA extraction: … RNA Extraction …
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Natural Prodcast Episode 4: Nancy Keller
… to Natural Prodcast! This is episode 4! From here on out, for a while, we’re going to be presenting some conversations … the feed, the secondary metabolism field has been dominated for … well, as long as I can remember, by bacterial … Aspergillus was pretty good, but, you know, just from a data standpoint, just figuring out introns and dealing with, …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … tools for viral genomics. Notable examples include CheckV , which assesses the quality and completeness of …
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