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Four Researchers Join JGI User Executive Committee
… State University, Jonathan Eisen of the University of California, Davis, and Michael Köpke of Lanzatech are the latest … The breadth of scientific expertise of both the recently elected and continuing members of the UEC reflects … evolution, ecology, genomics and function of microbes and microbiomes, especially those found in association with both …
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Taking Stock of the Known and Unknown Microbial Space
… the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … Seshadri, Nikos Kyrpides and Natalia Ivanova conducted a census of publicly available bacterial and archaeal … collection and on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) database. In their analysis, the team …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the journal  Environmental Microbiome . “Before JGI was involved, I was not sure we could even complete … sent through JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) system, reached  Emiley Eloe-Fadrosh , …
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Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC
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New Research Sheds Light on Diversity in the Deep Sea
… living near hydrothermal deep-sea vents hold vast potential for bioenergy.   The Science Hydrothermal vents are … in such extreme conditions. They identified 511 new or recently discovered genera of bacteria and archaea. Many of … are available on the JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published in the  …
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Open Frameworks Training the Next Generation of Scientists
… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS … biology analysis. KBase also supports  MICROnet (Microbiomes In Computational Research Opportunities … and analysis of fungal data, the course structures center around the practices of collecting samples and the …
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Examples: Successful LOIs & Submissions
… See below for examples of successful Letters of Intent to our … Genomics, and Facilities Integrating Collaborations for User Science calls. These documents have been shared … Elucidating Sphagnum microbiome genetic interactions for improved growth at elevated temperatures …
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Soil microbiome feedbacks during disturbance-driven forest ecosystem conversion
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … how ecosystems work and how healthy they are, a recent data set  outlined in  Scientific Data connects … molecular features to large ecosystem-level processes for the first time. By collecting data from 27 different …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in virtually all of Earth’s ecosystems. A software tool  recently described in  Nature Biotechnology  called geNomad … the National Microbiome Data Collaborative’s EDGE platform. The Impact In order to gain more insights into Earth’s …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an industrial scale to produce biofuels . Since one of the challenges of developing … process tough cell walls.  “The JGI was really leading the development of these approaches that are still vital to …
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Micro-Scale Applications Group
… of single-cell genomes and directly link functional information with individual cells. Research Team    … that allow us to select specific uncultivated microbes for sequencing based on their level of metabolic activity … For further details, please reach out to the Group Lead …
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