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Natural Prodcast Episode 6: Marc Chevrette
… the secondary metabolism side of things was looking at genomes and seeing where the really hard things to sequence … to unpack experimentally. But there’s a couple of different systems where people have made strides in that area. Where I … really interesting – when you can begin to see these guys building better weapons against one another. That gives us …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name … Wellcome Fund. The work (proposal:10.46936/10.25585/60001048) conducted by the US Department of Energy JGI …
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Natural Prodcast Episode 22: Alison Narayan
… interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural Products meeting … any association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, … element that needs to be taken into consideration in building these models. And so I think that one of the …
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Strategic Integration of Multiple Bioinformatics Resources for System Level Analysis of Biological Networks
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… on the Prize – Launching & Sustaining Startups in Synthetic Biology Who’s Invited? All Berkeley Lab Employees and … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
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Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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iPHoP: A Matchmaker for Phages and their Hosts
… more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to … is crucial to understanding what these viruses can do. Building on existing virus-host prediction approaches, … different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data points.  …
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A most wanted list of conserved microbial protein families with no known domains
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DOE Metrics
Goal (hours)** Actual Total Actual % Goal FY 2023 Total 600.0 716.929 119% 8,585 8,664 101% Q1 2023 150.0 170.477 … the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new …
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Advancing Genome-Resolved Metagenomics beyond the Shotgun
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