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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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Natural Prodcast Episode 22: Alison Narayan
… interviews we recorded at the Society for Industrial Microbiology and Biotechnology (SIMB) Natural Products meeting … any association that might help? Like, if you have an unknown sequence or new flavin monooxygenases, you could say, … element that needs to be taken into consideration in building these models. And so I think that one of the …
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iPHoP: A Matchmaker for Phages and their Hosts
… more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic sequences to … is crucial to understanding what these viruses can do. Building on existing virus-host prediction approaches, … different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data points.  …
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A most wanted list of conserved microbial protein families with no known domains
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
… on the Prize – Launching & Sustaining Startups in Synthetic Biology Who’s Invited? All Berkeley Lab Employees and … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Advancing Genome-Resolved Metagenomics beyond the Shotgun
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Products
… and quality of finished product depend on genome. Selected genomes will be improved based on feasibility and scientific … Single Particle Sort Draft quality assembly of amplified genomes from sorted cell(s)/particle(s), many unordered … Single Particle Sort Draft quality assembly of amplified genomes from sorted viral particles, unordered contigs …
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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Len Pennacchio
… methods to address wide-ranging questions existing in biology. He holds joint appointments as a Deputy Director at … on “NIH Comparative Genomics Resource” 2021-  Co-Chair, “Advances in Genome Biology & Technology- Agriculture” 2021-  … of Human Genomics, Sanger Center 2011-  Co-Organizer “Systems Biology of Gene Regulation and Genome Editing,” Cold …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… improving connectivity across the DOE data ecosystem, building and harnessing partnerships, enhancing the JGI’s … the bioeconomy. Functional diversity theme. Reading the genomes of individual organisms or environmental DNA, and … detection and prediction strategies for types of as-yet unknown pathogens. The JGI’s advanced data integration and …
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Exabiome: Advancing Microbial Science through Exascale Computing
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User Support
Investigator Providing a general orientation to JGI systems to Investigators Preparation of formal Statement of …
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