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Earth BioGenome Project: Sequencing life for the future of life
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Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
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Improving the Cacao Genome and Phytozome
… brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao … Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team …
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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility located at Lawrence Berkeley National Laboratory. The JGI consists of 225 researchers and … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a high-throughput AI-centric …
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JGI@25: Studying Sorghum’s Survival Skills
… climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in common … strengths into other plants. A brief timeline of sorghum projects at the JGI: 2009: JGI and collaborators use … the soybean relative Glycine max ( 2014 ) and the grass Brachypodium distachyon ( 2017 ), have identified many more …
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Len Pennacchio
… In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address … joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley … Genomic Technologies serves as the JGI’s primary point of contact for all High-Throughput Data Generation Platforms …
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Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes
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Natural Prodcast Episode 17: Cassandra Quave
… curator there, with a broad range of experimental work on plants for drug discovery in antibiotics, anticancer, and … find me. And really it was my third grade science fair project where I first looked into a microscope and just fell … it’s not that easy. There are still not that many plant genomes, certainly nowhere close to bacterial kinds of …
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Genome‐wide associations with flowering time in switchgrass using exome‐capture sequencing data
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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