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An Automated Tool for Assessing Virus Data Quality
… by research scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos … on open ocean samples. CheckV identified a total of 44,652 complete or near-complete viral genomes across both … the U.S. Department of Energy under contract no. DE-AC02-05CH11231. This work was also supported the grant …
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New Microviridae isolated from Sulfitobacter reveals two cosmopolitan subfamilies of single-stranded DNA phages infecting marine and terrestrial Alphaproteobacteria
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Water aging and the quality of organic carbon sources drive niche partitioning of the active bathypelagic prokaryotic microbiome
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Water mass age structures the auxiliary metabolic gene content of free-living and particle-attached deep ocean viral communities
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
Lovell, an evolutionary biologist at HudsonAlpha and first author of the study. “For that, it’s necessary to have the … Tom Juenger, a longtime JGI collaborator and a senior author on this study. The use of switchgrass as a feedstock … version of the genome is assembled into sequences of 5.5 million basepair (bp) in length, while the previous …
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Natural Prodcast Episode 5: Brad Moore
… because I was always swimming or surfing. And you know, 25 hours a day we’re at the beach practically. It was just – … has been a lot of fun for us in recent years. Started in 2015, when two things happened. One, a new graduate student … bloom ever observed on planet Earth. This was the 2015 Pseudonichia diatom bloom. It made a toxin called domoic …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… usually visible without the assistance of microscope. “It’s 5,000 times bigger than most bacteria. To put it into … biology at the Université des Antilles and a co-first author on the study, performed the 16S rRNA gene sequencing … JGI’s Microbial Program and is one of the article’s senior authors. The team was also compelled to study these large …
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Natural Prodcast Episode 4: Nancy Keller
… teach microbiology – “microbiology” – it’s almost 95% bacteria! What happened to all the other microbes? So … I don’t know, is 30 megabases? Basidiomyetes might get to 50. Some of them go to over 100. There. That can be the … is it a parasitic to?   NANCY: Humans. It causes – it’s terrible – it’s mostly in Africa. You get severe diarrhea, …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… is especially rewarding. Wint is listed as the primary author on this publication and drove the entire project, …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — ‘What are they doing? How do they interact?’” said senior author Francis Martin, a Research Director Emeritus at the … Auer, a research engineer at INRAE and one of the first authors of this work.  To compare these trophic guilds, this …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
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