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Micro-Scale Applications Group
… the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also … microbiome activity levels.This functional assay lets us move beyond cataloging the genes of microorganisms and … The JGI provides users access to cutting-edge cell sorting, DNA …
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Integrating Experimentation with Data
… $500     Students: $200      Postdocs: $250     Industry: $700    Thanks for joining the Joint Genome Institute … featured insightful presentations, dynamic panel discussions, informative poster sessions, thought-provoking … of Energy (DOE) Office of Science national scientific user facilities dedicated to advancing research in bioenergy …
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … “It’s an innovative way to rapidly capture the binding location for most transcription factors in a species,” … as tough as it has been 10 years ago,” he said. “We thought about reconstructing gene regulatory networks, understanding …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … switchgrass production areas across the U.S., guiding the location of the common gardens. “Gardeners and farmers fully …
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A More Intuitive Phytozome Interface
… interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … v13. Below are some answers to Frequently Asked Questions about the transition from Phytozome v12 to v13. Why is it … The ability to user query sequences to gene families What about PhytoMine? PhytoMine, the Phytozome implementation of …
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FICUS
… The Facilities Integrating Collaborations for User Science (FICUS) call represents a unique opportunity for researchers to … the capabilities and expertise of multiple DOE National User Facilities in one research proposal.  Successful … Proposals for the annual FICUS call with EMSL begin with a Letter of Intent (LOI) from a …
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Evolution of a Fungal Gene Expression Regulator
… elements or transposons that can move to another location in the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in transposons, which may help the pathogens … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office …
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Microbial Program
… The JGI’s Microbial Program focuses on using cutting-edge sequencing, annotation and analysis … genomic data to advance microbial research that drives sustainable solutions in energy, agriculture and ecosystem … The Microbial Program focuses on using advanced sequencing technologies to explore …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive … trees are incorrect or need to be changed, please contact us and we’ll work work it out 2.  Q(uestion): Do you publish … is not based on a genome model with PhycoCosm, how do we go about getting it in your system? A: I think the best way is …
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Metabolomics Program
… are crucial for advancing the bioeconomy, environmental sustainability, and improving bioenergy crops. … The Metabolomics Program is focused on understanding the critical roles of metabolites in … as they relate to DOE missions in the bioeconomy, sustainability, and environmental research. This program …
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Game On: High School Students Drive Everglades Metagenomics Study
… Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the … the next generation of scientists. She shares her thoughts about the experience below. In the summer of 2018, Jonathan … the Loxahatchee National Wildlife Preserve. They chose this location because much is unknown about the diversity of …
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Metagenome Program
… The Metagenome Program uses advanced sequencing technologies to decode the genomes … and micro-eukaryoes, along with their associated viruses and mobile genetic elements. Beyond exploring and … microbial diversity, work in the Metagenome Program uses several experimental approaches to assess microbial …
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