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Novel and Emerging Capabilities that Can Provide a Holistic Understanding of the Plant Root Microbiome
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Old can be new again: HAPPY whole genome sequencing, mapping and assembly
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Sequencing Technologies & Products
…   Our Sequencing Technologies Group is well-integrated across JGI departments to ensure a robust offering of sequencing … An assay used for profiling transcription factor binding sites … The JGI uniquely offers quantitative Stable Isotope Probing (SIP) Metagenomics to the …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and … in flowering plants, or angiosperms, suggesting they are evolutionarily conserved across plant lineages. They … plant’s genetic variants with specific adaptation mechanisms they had identified. For example, in comparing …
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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
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Institutional User Agreements
… Every approved proposal starts with a User Agreement — before any work can begin, including the submission of samples for … After your proposal is approved, the Contracts Officer will …  After your home institution has signed, all documents can be emailed to the CO.  The CO will sign on behalf of …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately … details of life’s genetic blueprint has long been a significant challenge in genomics. Enter GenomeOcean, a powerful … can take advantage of existing methodologies developed for natural languages to study genomes,” Wang explained.  And …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data … entered by external users. The Impact One of the significant challenges in maximizing genomic data usage is having … U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the …
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The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 … Environmental Research “There are two kinds of scientific revolutions,” Ari Patrinos opened with this quote from Thomas … with the FICUS program, through which researchers can access multiple DOE facilities with a single proposal. …
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Viral community analysis in a marine oxygen minimum zone indicates increased potential for viral manipulation of microbial physiological state
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Unveiling the viral frontier in a warming world: temperature as a key ecological driver of viral diversity in subantarctic Chilean Patagonia fjords
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