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DOE Metrics
… the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one new … is due to planned upgrade of the Laboratory Information Management System (LIMS) and temporary shut down of the … Hours reflect a delay in implementation of the LIMS from Q2 to Q3. As a result of the delay in the LIMS …
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Enlarging Windows into Understanding Gene Functions
The technology expresses the transcription factor proteins from a DNA template amplified directly from either genomic … it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows … capabilities to further their research, watch the JGI Engagement Webinars series. Letters of Intent for the next …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… by weeks of tricky, laborious lab work to analyze samples from one experiment. Starting a  few years ago, researchers … This group included Elisha Wood-Charlson, User Engagement Lead for the DOE Systems Biology Knowledgebase … hundreds of stable isotope probing genome-resolved metagenomes and will be implementing new tools in KBase to …
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Ancient Algae Reveal Secrets of Plant Evolution
… enhanced our understanding of how early plants transitioned from water to land. Key gene groups involved in stress … Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which were isolated … in improving plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm …
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JGI Workshop at SIMB NP Meeting
… a given BGC in various hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome sequences. The DOE Joint Genome …
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Biochemical characterization of Fsa16295Glu from “Fervidibacter sacchari,” the first hyperthermophilic GH50 with β-1,3-endoglucanase activity and founding member of the subfamily GH50_3
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JGI Workshops at PAG
… breadth of algal diversity, the numbers of sequenced algal genomes, and the quality of those genomes, is rising. The purpose of this Workshop is to … at the JGI and KBase toward integrative biology and hear from researchers who are applying genomic sequence …
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JGI announces final round of 2022 Functional Genomics awardees
… proposals for state-of-the-art functional genomics research from potential users who need help translating genomic …
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Honey Bee Gut Microbiota Divvy Up Dinner
… bacterial clades shared between honey bee and bumblebee gut microbiomes. Researchers found that pollen’s pectin and …
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Zwartia hollandica gen. nov., sp. nov., Jezberella montanilacus gen. nov., sp. nov. and Sheuella amnicola gen. nov., comb. nov., representing the environmental GKS98 (betIII) cluster.
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Tanja Woyke Elected to American Academy of Microbiology
… is among the 68 new Fellows in the Class of 2020, selected from 118 nominees. The selection process for AAM Fellows is … genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One … in Nature , applied single-cell sequencing to decode genomes of bacteria and archaea from previously understudied …
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Filling in the Plant Tree of Life
… food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project …
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