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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more and more virus sequences are … by viruses in their environments. Environmental DNA sequencing can help scientist to recover the genomes of … The work conducted by the U.S. Department of Energy Joint Genome …
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Katherine Louie
… Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts to expand the … are a result of Dr. Louie’s establishment of a strong core foundation of robust mass spectrometry workflows for … V, Northen TR, et al. Bioactive diterpenoids impact the composition of the root-associated microbiome in maize (Zea …
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Taking Stock of the Known and Unknown Microbial Space
… Metagenomic datasets could help map out microbial diversity hotspots Over the past few decades, advancements in sequencing technologies have led to an abundance of … and bioproducts, and medicine. Wading through 30 years of sequencing data, the team composed of Wu, Seshadri, Nikos …
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Supercharging SIP in the Fungal Hyphosphere
… Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in the  November 2022 … at a larger scale through downstream DNA purification and sequencing steps. Ultimately, researchers found their …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their … of regulon identification by in vitro transcription-sequencing (RIViT-seq) to facilitate the characterization of … which combines an in vitro transcription assay with RNA sequencing, they were able to identify the target genes of …
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Annual Genomics of Energy & Environment Meeting
… Annual Genomics of Energy & Environment Meeting! The JGI convenes this annual gathering of leaders from diverse … talks emphasize how the research infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new … – that the JGI offers through proposal calls on a competitive, peer-reviewed basis to the worldwide scientific …
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JGI@25: Studying Sorghum’s Survival Skills
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … JGI: 2009: JGI and collaborators use whole-genome shotgun sequencing to analyze the 730-megabase Sorghum bicolor (L.) … it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis improve the genome’s …
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High-Quality Draft Genome Sequences of the Uncultured Delta3 Endosymbiont (Deltaproteobacteria) Assembled from Metagenomes of the Gutless Marine Worm Olavius algarvensis
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Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
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Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica
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High-Quality Draft Genome Sequence of Kallotenue papyrolyticum JKG1T Reveals Broad Heterotrophic Capacity Focused on Carbohydrate and Amino Acid Metabolism
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High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia
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