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What Happens To a Rainforest When You Dial Up Drought?
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SPRUCE-ing Up Science
… how microbial and bacteria communities influence the carbon-sequestering abilities of peat moss. Peat is found in the … 2013, this field was just beginning to develop and expand into the world of evolutionary biology. And around that … that from Zhong.”   Publication: Carrell AA et al. Habitat-adapted microbial communities mediate Sphagnum peatmoss …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… part that was the most rewarding of all the work that went into this program was the feedback from the graduate student …
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10 From JGI on the 2019 Highly Cited Researchers List
Genomics Lead Dan Rokhsar, Molecular Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal … field experiment to uncover the genetic basis of local adaptation in switchgrass. Reported in the Proceedings of the … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …
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Better Crops With a Pointillist Approach to Plant Genomics
In this episode, we peer into plant cells. Researchers are using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … perform functional assessment, host prediction, and phylogenetic analysis. The development of CheckV helps … picture of a virus, and for viruses that have integrated into the host genome, these sequences may be tainted by the …
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Accelerating Metagenomics Discoveries with Deep Learning
… learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples rather than single cells or isolated strains, is easy to generate, but difficult to assemble and interpret. The … learning, data is passed through algorithms organized into multiple interconnected layers. The architecture of …
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Exploring the Diversity of the American Prairie’s Switchgrass
… traits — height, biomass, hardiness to cold, etc. — to its genes. The undertaking took shovels, trucks — and more than …
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Digging into Microbial Ecosystems Deep Underground
… (FICUS) . Through FICUS, the researchers have tapped into the resources and capabilities of both the JGI and the …
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JGI at the AGU Fall Meeting
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Mindfully Moving JGI
Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years … labs in one long building at Walnut Creek, after countless generations of sequencing platforms (up to 120 sequencing … out the building.  We don’t want to just throw everything into the landfill, we need to be able to divert it …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across …
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