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Trent Northen
… large DOE-funded research programs using mass spectrometry for energy and environmental research, including through the … B.S. in Chemical Engineering, University of California Santa Barbara Ph.D. in Chemistry and Biochemistry, … growth of Brachypodium in EcoFAB 2.0 reveals that nitrogen form and starvation modulate root exudation. Science …
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Gut Fungi: Unexpected Source of Novel Chemicals
… — an energetically expensive feat thought to be too costly for them. The Science Anaerobic fungi, which die in the … the genomes of four anaerobic fungal species has revealed, for the first time, that this group is unexpectedly … compounds may also be involved in how the fungi metabolize plant biomass, which could inform how scientists can more …
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
… are at the heart of sustaining food and bioenergy security for a steadily growing worldwide population. Anuvia Plant Nutrients , a small Florida business producing … drive discoveries that will render new economic advantages for farmers concerned with improving sustainable soil …
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Operating Expenses
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Accelerating Metagenomics Discoveries with Deep Learning
… participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … to “learn” features. State of the art algorithms can perform astonishing degrees of feature recognition: for … using HMM profiles of protein domains from the pfam database to test the efficacy of a particular kind of deep …
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Four principles to establish a universal virus taxonomy
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… was being waged. In the JGI@25 video below, Susan Lucas, former JGI Production Department Head and current ESnet … the people and resources from these three national labs to form the DOE Joint Genome Institute in 1997. Over the next … years, and in collaboration with researchers at the Stanford Human Genome Center, JGI staff worked around the clock …
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The JGI Data Portal: Improving User Experience
… agile collaboration between the JGI and the information technology company Truss has resulted in the JGI … resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , JGI’s Chief … It includes several user-validated features and updated functionality, such as: The ability to select data by type …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… mosses.  New research identifies sex chromosomes in the plant and illuminates the significant role sex plays in how … by minimizing flood risks and filtering water. Peat formed there over thousands of years sequesters more carbon … vegetation types in the world combined. Harvesting peat for energy has been increasingly discouraged due to …
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VEGA Symposium
… Hosted by the DOE Joint Genome Institute, the 5th Viral EcoGenomics and Applications (VEGA) symposium will take place … the goal of this symposium is to bring together a “Viral Ecogenomics” community to foster discussion on how to best … understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity toward …
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Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light
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Novel bacterial clade reveals origin of form I Rubisco
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