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Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia.
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Sterol methyltransferases in uncultured bacteria complicate eukaryotic biomarker interpretations
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… the tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Those similarities, based on their ratios of small DNA sequence fragments called tetranucleotides, are a way to …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly … crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is octoploid (eight … each chromosome). All of these genomes are available on the JGI plant portal  Phytozome . “The broad applicability of …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … use CRISPR-Cas systems to recognize and remove invaders’ DNA from their own genomes. One of these systems, the … Focus Area funded by the US Department of Energy (DE-AC02-05CH11231 to J.F.B.). The work ( proposal doi: …
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The Power of One, Amplified
… more moderate ecosystems. A few years ago, a candidate bacterial lineage was identified from microbial and … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was performed by Danielle Goudeau and Rex Malmstrom of the JGI’s Microscale Applications group . Cells were randomly …
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Statement on the Use of Genomics Data
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is committed to advancing the field of genomics through … rights under JGI’s policy. In parallel, as of March 2nd, 2021, the JGI temporarily halted all automated submissions to … a Request for Information (RFI), closing April 21st, 2021, to solicit additional community feedback on proposed …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory … (FICUS) program. Letters of Intent are due March 17, 2021. Q&A from the Webinar: Q(uestion): Who can apply for … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Novel Z-DNA binding domains in giant viruses.
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Acquisition and Adaptation of Ultra-small Parasitic Reduced Genome Bacteria to Mammalian Hosts
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Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis
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Deep‐sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill
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