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A Powerful Technique to Study Microbes, Now Easier
… help process experiments that measure microbial activity in soil. Now, the researchers and robots have made these …
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New Research Sheds Light on Diversity in the Deep Sea
… get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … survive in very hot, high-pressure and chemically-rich ecosystems. This means they hold clues for understanding how … metagenomic sequencing to the study as well as  genome analysis, providing authors a more complete picture of the …
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Introducing New Members of the JGI User Executive Committee
… serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons … efforts with diversity, equity and inclusion in mind. Microbiome ecologist Shade became Director of Research at … aims to help overcome common user bottlenecks in access, analysis and sharing of JGI-generated data. She is also …
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Access to Rock Star Scientists
… their work delivered during the 5th anniversary celebration of the internship program. Candace Cole, UC Merced JGI … : Ben Cole & Axel Visel, Genomics of Plant-Microbial Interactions “The summer internship has further confirmed by … Mo Kaze, UC Merced JGI Mentor : Susannah Tringe, Microbial Systems Group “Everyone here is very kind and really open to …
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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one … staff, Biosciences and Berkeley Lab leadership, the half-dozen JGI advisory committees and its primary funders at the … JGI supports, include JGI’s emerging leadership role in a Microbiome Data Science effort (pages 37-39) and the …
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Tanja Woyke
After studying the mechanism of action of antifungal natural products and their … 20: 721 Nayfach et al. 2021. A genomic catalog of Earth’s microbiomes. Nature Biotechnology 39, 499-509. Schulz et al. … Woyke et al. 2006. Symbiosis insights through metagenomic analysis of a microbial consortium. Nature 443, 950-955.   … …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Ken Chu
Ken leads the development and maintenance of analytical tools and user interface components for the IMG family of systems. …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … Genome R&D Group and is one of more than 100 scientists and systems engineers involved in computational work at the JGI. … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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The Genome of the Acid Soil-Adapted Strain Rhizobium favelukesii OR191 Encodes Determinants for Effective Symbiotic Interaction With Both an Inverted Repeat Lacking Clade and a Phaseoloid Legume Host
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
In honor of the JGI's 25th anniversary in 2022, we have revisited a … as Sudden Oak Death or by its acronym, SOD. Of the dozens of Phytophthora species, the most globally-recognizable … which imperils soybean harvests. The subsequent comparative analysis of these two pathogens, led by the JGI and Virginia …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant viruses. While the microbes in a single … distribution of these viruses in the various ecosystems, their diversity, their predicted metabolic features … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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