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Genome-Wide Association Studies across Environmental and Genetic Contexts Reveal Complex Genetic Architecture of Symbiotic Extended Phenotypes
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CO2 response screen in grass Brachypodium reveals the key role of a MAP kinase in CO2-triggered stomatal closure
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Metabolic profiling of two white-rot fungi during 4-hydroxybenzoate conversion reveals biotechnologically relevant biosynthetic pathways
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JGI Earth Month: Wetlands Work in #TenHundredWords
… program . Her research project, “Microbial Community Structure and Methane Production in California’s Canal … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … a global analysis of the diversity, distribution, and evolution of virophages.” Lead author David Paez-Espino  …
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A More Intuitive Phytozome Interface
… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 … on much more maintainable software and hardware infrastructure. Phytozome v13 has been accessible to users since …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past … Lavenstein Bendall and mentor Juan C. Villada, Ecology & Evolution of Self-Catalytic Introns across Earth’s … Theo Loreaux and mentors Simon Roux and Frederik Schulz, Structure Prediction to Annotate Novel Viruses: the Case of …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant … different recombination profiles. This is akin to the structure of social media networks where one social media …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … “Although the technical challenges of data analysis at this scale are formidable.” Computational Sieves to Filter … approaches to analyze and classify sequence data at this scale is essential.”   …
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RETRACTED ARTICLE: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi
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Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave
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