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Genome-Wide Association Studies across Environmental and Genetic Contexts Reveal Complex Genetic Architecture of Symbiotic Extended Phenotypes
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CO2 response screen in grass Brachypodium reveals the key role of a MAP kinase in CO2-triggered stomatal closure
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Metabolic profiling of two white-rot fungi during 4-hydroxybenzoate conversion reveals biotechnologically relevant biosynthetic pathways
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are … program . Her research project, “Microbial Community Structure and Methane Production in California’s Canal … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … a global analysis of the diversity, distribution, and evolution of virophages.” Lead author David Paez-Espino  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version 12 of … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … on much more maintainable software and hardware infrastructure. Phytozome v13 has been accessible to users since …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past summer. This year’s cohort for the JGI-UC Merced … Theo Loreaux and mentors Simon Roux and Frederik Schulz, Structure Prediction to Annotate Novel Viruses: the Case of …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. … mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that dominant … different recombination profiles. This is akin to the structure of social media networks where one social media …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … “Although the technical challenges of data analysis at this scale are formidable.” Computational Sieves to Filter …
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RETRACTED ARTICLE: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi
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Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave
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