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Benjamin Cole
… interested in studying how plants interact with their environment. Prior to joining the Joint Genome Institute, his … cells respond to their biotic environment using emerging single-cell characterization technologies (scRNA-seq, … of Cell Identity as an R package … Education … Selected Publications … Software …
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Methane Makers in Yosemite’s Lakes
… and met local wildlife (a marmot!) as they’ve sampled the microbial communities living in the mountaintop lakes of the Sierra Nevada mountains. …
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Special Initiatives & Programs
Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for … intended to accelerate basic research in the development of cellulosic ethanol and other biofuels, advancing the federal … existing data set, or the refining of new technology (e.g., single-cell genomics; metagenomics, etc.).   The …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. Virophages are small viruses with …
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JGIota: Looking Back at Methane-Making Microbes
We count on livestock for food and fiber, but raising these animals also produces an atmosphere-warming gas: … 2010, the JGI has supported researchers studying those microbial methane-makers. Eventually, that could help us …
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The Busy World of Deep Sea Eruptions
The ocean depths are vast and dark. But there are hotspots on the ocean floor — underwater volcanoes and hydrothermal vents — where lively microbial communities thrive, and even support entire … St. John, Gilberto Flores, and Peter Girguis about sampling these communities, and understanding how they’ve adapted …
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A Complex Confection Decoded: Sugarcane Reference Genome
… genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by tonnage, … some duplicates, to sort through in order to form a single cohesive image. An approximately nine billion base …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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JGI Scientists Pen Genome Watch Articles
Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — … of Science User Facility located at Lawrence Berkeley National Laboratory, are sharing their expertise in … with an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the JGI, received a message from Andrea …
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Introducing New Members of the JGI User Executive Committee
Committee (UEC) – Jack Gilbert, Ashley Shade, and Jason Stajich! They join six other JGI users already serving on the UEC – go here … had their own reasons for wishing to serve on the UEC. For microbial ecologist Gilbert at the University of California …
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Contribution of calcium ligands in substrate binding and product release in the Acetovibrio thermocellus glycoside hydrolase family 9 cellulase CelR
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential carbon cycling impact.   The … and climate is estimated to be larger than any other single plant genus. Peatlands accumulate partially …
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