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Accelerating Metagenomics Discoveries with Deep Learning
… from Lawrence Berkeley National Laboratory (Berkeley Lab) and other institutions shared their works-in-progress with … Genome R&D Group and is one of more than 100 scientists and systems engineers involved in computational work at the JGI. … Lab’s Biological Systems and Engineering), to assign microbial taxa (Andrew Tritt of CRD and, independently, Ying …
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The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections
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User Advisory Committees
… which guide the relationships we nurture in our workplace and seek to establish with our stakeholders. The guiding … The UEC represents the JGI user community and is responsible for providing input and advice on JGI policies and practices that affect users … (JAC) is convened by the JGI Director to provide guidance on the Institute’s strategic, scientific, technical, …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… into a symbiosis could offer benefits to address climate change: pulling atmospheric carbon into soil and boosting … 188 of which were shared with previous studies in the same system. With the right functional characterization, those … This work focused on a relatively well-understood model system, so future directions will also include targeting …
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… event will bring together researchers across major ecosystems and disciplines who are developing and applying laboratory ecosystems to help transition microbiome science from largely …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in … external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … because they influence geochemical cycling in forest ecosystems. By deciphering the fruiting-related decomposition …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
… To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone …
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Partners
… The JGI leverages its existing partnerships and develops others providing complementary expertise to advance the science and serve as impact multipliers . The JGI … Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National …
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DNA Scanner: a web application for comparing DNA synthesis feasibility, price and turnaround time across vendors
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