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Model Choice, Missing Data, and Taxon Sampling Impact Phylogenomic Inference of Deep Basidiomycota Relationships.
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IMG/VR v.2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
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Metatranscriptomic Sequencing of Winter and Spring Planktonic Communities from Lake Erie, a Laurentian Great Lake
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iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria
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Integrating Microbial Community Data Into an Ecosystem‐Scale Model to Predict Litter Decomposition in the Face of Climate Change
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Global Archaeal Diversity Revealed Through Massive Data Integration: Uncovering Just Tip of Iceberg
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A multifunctional sesquiterpene synthase integrates with cytochrome P450s to reinforce the terpenoid defense network in maize
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JGI@25: Fueling Investigation into Methane-Making Microbes
… livestock — specifically, from the methane-making microbes within their rumen. There is another climate-minded reason … curated culture and genome sequence resource of rumen microorganisms . Thanks to the breadth of this study, researchers … to a collection of novel enzymes — many of which contained interesting properties in themselves. For example, a few …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, … improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large vertebrate genomes.  … model plant Setaria. Nature Biotechnology 30: 555-561. The International Brachypodium Initiative. Genome sequencing and …
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Metatranscriptomic analysis reveals dissimilarity in viral community activity between an ice-free and ice-covered winter in Lake Erie.
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text … the specific sequence of these four letters represents an organism’s genetic code, or genome, which underlies physical … however, is the need to purify each transcription factor of interest. Nature Methods paper coauthor Lee did the initial …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels … was part of the  2018 cohort of the JGI-UC Merced Genomics Internship Program, and is part of  Mark Sistrom’s lab at … the UC Merced School of Natural Sciences. The JGI-UC Merced Internship Program was developed between the two …
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