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Finding the Fermenters
IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M for all protein-coding genes belonging to each genome. The final dataset – … 8,350 organisms along with 4,355 genomes and 13.6 million genes. The results reveal that fermentative metabolism is …
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Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… range of topics related to structural biology, single cell and systems biology, omics, and big data science, … is the method development to study active sites or single cells in their functional aqueous environment.  During the …
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Triggering Morel Fruiting
… capability of morel mycelium to acquire carbon from lignocellulosic-abundant matters such as plant litter and to incorporate the assimilated carbon into … Kuo, O’Donnell & Volk) to successfully fruit in common farmland soils. Compared to the contingent fruiting in the wild, …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… are everywhere — in soil, the sea and, of course, the cells of other organisms. As they infect microbes like … genomes. That study multiplied the number of known viral genes by a factor of 16. The same year, the JGI expanded its … would give researchers more ways to engineer microbial genes. Eventually, whether the goal is improving soil …
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A call for standardized classification of metagenome projects
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Nick Everson
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Forest Fungi, Seagrass, and a New View of Symbiosis
… on the symbiotic relationship between mycorrhizal fungi and plant roots.  …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric … of archaea called  Euryarchaeota . These ancient, single-celled organisms thrive in most  environments devoid of … cultivating a single microorganism within a lab setting.  Roland Hatzenpichler is an associate professor at Montana …
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Genome-Scale Data Call for a Taxonomic Rearrangement of Geodermatophilaceae
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Understanding Wildfire Recovery, Starting in Soil
… process carbon and nitrogen, paving the way for future plants and trees to grow. However, fire changes the microbes … across a spectrum of burned soils. By connecting microbial genes with functions useful for forest recovery, this study … store carbon, filter water, and support all kinds of plants and animals, but with climate change driving more …
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Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
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