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Exploring Polymorphisms Created by Transposable Elements
… elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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Statement on the Use of Genomics Data
… the HGP, the JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to … first. For nearly 40 years, the International Nucleotide Sequence Database Collaboration (INSDC) has managed the growing corpus of sequence data for all organisms as a public good available …
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Len Pennacchio
… Program Defining the vast landscape of gene regulatory sequences in the human genome. Understanding how variation in regulatory sequences influences human disease/biology. Assessing and …
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Searching for new branches on the tree of life
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Fungal Friends or Foes in Plant Roots
… a mycobiome culture collection consisting of fungal species from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …
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Mindfully Moving JGI
… Twenty years after the JGI united the genomics expertise of three national labs in one long building at Walnut Creek, … 20 miles away in another city and county began more than three years ago. For JGIers, the moving process began in …
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How To Use Our Systems
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Ancient Algae Reveal Secrets of Plant Evolution
… Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … life.  These led to highly detailed assemblies for three strains of  Zygnema circumcarinatum . Published  May … plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm portal. …
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Uncovering Novel Genomes from Earth’s Microbiomes
… under laboratory conditions, their genomes can’t be sequenced using traditional approaches. Identifying and … of metagenome-assembled genomes (MAGs) directly from sequenced environmental samples without needing to cultivate … dataset, Nayfach clustered the MAGs into 18,000 candidate species groups, 70% of which were novel compared over …
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Near-Complete Genome Sequence of Zygosaccharomyces rouxii NRRL Y-64007, a Yeast Capable of Growing on Lignocellulosic Hydrolysates
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Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii
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Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga Dunaliella salina Strain CCAP19/18
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