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JGI & KBase at PAG XXVII
… science opportunities. Learn how to apply for a project with the JGI Community Science Program, and how you … integrative biology. Researchers who are applying genomic sequence information to BER-funded activities of plant … Populus 8:03 PM Natural Diversity in  Setaria  and a Novel Gene for Shattering   In mid-2019, JGI and KBase will be …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback … in their proposal as long as they’re staying under the sequence cap? A(nswer): Proposals that are looking at … to reach that maximum with broader questions and broader project scope? A: Focus on strong science and …
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Genomic analysis of 94 SEMIA strains isolated from common bean nodules: species diversity and genes related to nodulation, nitrogen fixation, and tryptophan metabolism
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Viruses Reprogram Cells into Different Virocells
… In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics and …
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Doubling Down on Known Protein Families
… the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic makeup of these communities via whole genome …
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How Microbes Can Protect Plants in Drier Straits
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The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and evolution through extensive horizontal gene transfer
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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JGI-UC Merced Interns Share Their 2021 Experiences
… virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate … the previous year and continue working on their research project! The JGI-UC Merced internship program was founded in … Making Big Data Metagenomic Clustering Scalable …
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Busting the Unbreakable Lignin
… JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the reference fungal  genome . …
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From Competition to Cooperation
… With so many fungal  genomes , the team conducted a large-scale comparison, charting several changes caused by the … to white rot fungi. Additionally, some of the saprotrophic genes found in the mycorrhizal species, such as nutrient … The project was funded by the U.S. Department of Energy Joint …
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