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… into functional assessments. This is done by synthesizing genes, pathways, and whole chromosomes for bioenergy, … JGI Biodesign platform enables users to validate hypotheses generated from mining genomic data by designing and …

… their growth program, and on how plants coordinate their gene expression with light and temperature oscillations … how microbes can colonize plant roots, focusing on genetic components required for effective colonization. In … Selected Publications …

… methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … and, acetoclastic. All three pathways require the gene cluster for methane production known as Mcr. Until recently, the Mcr gene cluster was found only in the archaeal lineage …

… in  Nature by an international consortium. With the genetic code of sugarcane, researchers were able to map the … Sugarcane accounts for 80% of sugar production worldwide, but has one of the most complex genetic blueprints. … Institute. The work was partly enabled by the JGI’s Community Science Program; in 2018, a monoploid reference …

… of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while retaining multiple copies of some genes. This polyploidization process is ongoing and many … Context For the study, partly enabled by the JGI’s  Community Science Program , the team generated reference …

… Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of … Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, Pacific Northwest National … the DNA sequence that makes up an individual’s genome. The genes of sorghum plants are likely responsible for the …

… Biotechnology.  The work also led researchers to identify a gene related to seed dispersal in wild populations for the … of 52,515 publicly-available microbial draft genomes generated from environmental samples around the world. Much … than 200 scientists and sequenced by the JGI through the  Community Science Program, and already available on the …

… that biomass could serve as the starting material for a wide range of fuels and chemicals. To get to that point, …

… reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have … its Sorghum bicolor reference genome and releases it to the community. 2014: GENCODE project begins. To support growing … each variety stores sugars and sequesters carbon. 2015: Epigenetic Control of Drought Tolerance in Sorghum (EPICON) …

… getting these data on our system. If it’s not based on the gene model, that should be ok generally. We can work with you to re-map the data. If your … A: Combination of: DOE mission relevance Science User community – trying to produce resources for large groups of …

… grasses using Panicum hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged … candidate bioenergy crop, switchgrass. Through the JGI’s Community Science Program , JGI sequenced and assembled … used QTL mapping to find the genomic regions that control gene expression and physiological responses to drought. They …

… teems beneath your feet. Both bacteria and fungi have genes that can break down plant fibers. But are they both … UniProt, exist, are not specific enough for a microbial community like that from a temperate coniferous forest floor … sequences (transcriptomes) from their soil samples. This gene expression dataset was particularly important for …