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Gene Expression: From On-Off Switch to Dial
… approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the … that were missed using traditional approaches. This novel form of intermediate expression, when used in addition to … Metabolic engineering could lead to sustainable pathways for making high-value bioproducts including biofuels. In …
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Katherine Louie
… to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics capabilities and product … Transitions in the Green Alga Chromochloris zofingiensis. Plant Cell. 2019;31: 579–601. 5. Erbilgin O, Rübel O, Louie …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … individual user facilities. A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the Department of Energy’s funding of …
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Doubling Down on Known Protein Families
… unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … each individual microbial species within a community. Therefore, the process hinges on referencing to existing genome … that the majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences …
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Nikos Kyrpides
… Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the … led the development of the genome analysis and Bioinformatics core at Integrated Genomics Inc. in Chicago, IL. … Roux S. et al. 2019. Cryptic inoviruses are pervasive in bacteria and archaea across Earth’s biomes. Nature …
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Scaling Up Existing Skill Sets
… paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from … in Quantitative and Systems Biology Mentor: Guohong Wu, Plant Comparative Analysis What effect has your summer …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… Rumen microbes have the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … one of the challenges of developing alternative fuels from plants is the high cost and resource requirements of …
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Community Science Program
… sequencing, synthesis, and metabolomics at the JGI for projects of relevance to Department of Energy (DOE)  … fall under the umbrella of our CSP: The Large Scale call is for expansive projects that leverage a range of JGI … requires a Letter of Intent. The New Investigator call is for PIs who have never led a JGI project, and the Functional …
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JGI-TMF Critical Minerals and Materials Call
… Minerals and Materials call represents a unique opportunity for researchers to request the capabilities and expertise of … science, accelerating discoveries and developing transformative bio-based technologies that address challenges in … and utilization of critical minerals and materials. For accepted proposals, sequencing, synthesis, metabolomics …
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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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