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… with ratios of DNA sequence fragments from the ecosystems. Selecting a protein identified from their studied … global metagenomes (within IMG).  The Impact The initial analysis highlights abundances of gene annotations that … across the bioeconomy. Summary As described in a  recent  mSystems paper , a team at the DOE Joint Genome Institute …

… in research area, gender, as well as stage of professional development. “There are a lot of really great early career … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  … sequestration. Poplar trees grow quickly in a variety of ecosystems and contribute to stabilizing streambanks, wildlife … is 25 terabytes in size. Resources for genomic sequencing, analysis and characterization were provided by the U.S. …

… of the internship, 4th year PhD student in Quantitative and Systems Biology Mentor: Guohong Wu, Plant Comparative Analysis What effect has your summer internship with the JGI … Class Year: 2nd year graduate student in Quantitative and Systems Biology Mentor: Ernst Oberortner, Functional …

… carbon and nitrogen fixers in alpine and high latitude ecosystems, deciphering their internal molecular mechanisms can … the fungus and alga, either separately or together, on nitrocellulose filters in Petri dishes. The scientists also … alga genome) and  MycoCosm (for the fungus genome) to aid analysis. Many of the results were unexpected. For example, …

… expanded genes for proteins requiring zinc. Co-expression analysis as well as laboratory culture experiments showed … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …

… microbial and plant metabolism across diverse ecosystems — from Antarctic soils and Icelandic hydrothermal systems to coastal wetlands and permafrost. Their work …

… within the soil. To get a clearer picture of how burned ecosystems return to health, researchers have taken a look at … fungi, bacteria and viruses survive. With this metagenomic analysis, it was possible to identify specific attributes — … microbes in burned soils had in common.  To complete this analysis, a multi-institutional team of researchers …

… Genomes & Microbiomes (IMG/M) portal for their sample analysis.  The class had to sift through over 55 billion … with Texas A&M researchers to assist them with soil sample analysis for nitrogen and carbon concentrations along with … they defined, prepared, and carried out their research and analysis for this project. They had learned many statistical …

… multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine learning to … In an LDRD-funded project, Dr. Schulz established a single-cell-based discovery pipeline and enrichment metagenomics … ecological roles of microeukaryotes in terrestrial ecosystems. Additionally, Dr. Schulz is leading a DTRA-funded …

… how KBase (www.kbase.us) can support biological data analysis. It is a free, open source analytics platform … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …