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Virus-Microbe Interactions of Mud Island Mangroves
… a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of … Rambo’s work was overseen by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and … the SCGSR research experience was “an ideal opportunity for me to get real-world experience.” As he finalizes his …
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Chomping Toward Better Plastic Recycling
… We know all kinds of things about plastic – except, how to break it down for recycling. But some hungry insects can digest plastic. …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably … authors of the  recent study published in  The Plant Journal.  this study included the discovery of candidate genes …
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Party in the Rhizosphere
… rhizosphere. In this episode, biologist Jennifer Pett-Ridge of Lawrence Livermore National Laboratory has your backstage …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … bean. That work was published online June 8, 2014 in the journal Nature Genetics . “Common beans are a major societal … Africa. For smallholder farmers — those with less than two hectares of land — common bean is often a food at every …
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A Step Toward Controlling Soybean Rust
… causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science … , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed sequencing a …
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Identifying candidate structured RNAs in CRISPR operons.
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group … ecogenomics” community, the VEGA symposium provides networking opportunities and fosters discussions on how to …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, we’ve covered the specialized software and supercomputers behind this project. But every …
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IMG Webinar Series
… Find a series of webinars related to our Integrated Microbial Genomics & Microbiomes portal. …
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JGI Accepts 17 Proposals for Community Science Program
… Interactions Within Ecosystems Latest portfolio of approved proposals highlight biodiversity and how … on harnessing genomics to developing sustainable resources for biofuels and bioproducts. Andrew Nelson of the Boyce … biorefinery products. The work builds off a previous international collaboration that produced the reference genome …
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Hiroshi Otani
… technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … BS, Engineering, Tokyo Institute of Technology Master's, Biotechnology, University of Tokyo PhD, Biotechnology, University of Tokyo … Udwary DW, Mouncey NJ. Comparative and pangenomic analysis of the genus Streptomyces. Sci Rep. 2022 Nov 7;12(1):18909. …
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