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MycoCosm Tutorial
… Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics datasets, equipped …
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Tanja Woyke Elected to American Academy of Microbiology
… to the JGI’s Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 … AAM Fellows is based on their records of scientific achievement and original contributions that have advanced … Genomics Department Head for the Environmental Genomics and Systems Biology Division of the Lab’s Biosciences Area since …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship … Internship co-founder Axel Visel and UC Merced Quantitative Systems Biology professor Carolin Frank reflected on the … their perspectives and views” helped her further develop management and supporting skills for the students. Being …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve been revisiting a number … kinds of supplies in the quest to break down plants.  In 2016, her team leveraged transcriptomics and other assays to …
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Genome analysis of ‘Candidatus Ancillula trichonymphae’, first representative of a deep‐branching clade of Bifidobacteriales, strengthens evidence for convergent evolution in flagellate endosymbionts
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Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure
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Analysis of the Neurotoxin Complex Genes in Clostridium botulinum A1-A4 and B1 Strains: BoNT/A3, /Ba4 and /B1 Clusters Are Located within Plasmids
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Refinement of the “Candidatus Accumulibacter” genus based on metagenomic analysis of biological nutrient removal (BNR) pilot-scale plants operated with reduced aeration
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Extracting the Secrets of Secondary Metabolites
… CRAGE-CRISPR combo helps further demystify biosynthetic gene clusters.  The … molecules not essential for growth yet essential for survival, may now be easier to characterize following a … monitor loss- and gain-of-function. The study’s analytical data shows peaks and valleys in secondary metabolites as …
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SIPs with Standards
… Isotope Probing (SIP) is a powerful technique for studying microbial communities. These experiments can show which … and even how quickly. But there's a catch: SIP labwork and analysis can be very demanding.  The JGI offers SIP analysis … more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This …
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Workforce Development & Education Outreach
… Outreach at JGI takes many forms: We offer internship opportunities through working directly with specific universities, continuing education programs in the Bay Area, … JGI’s role in enabling complex biological and environmental systems research.  … The JGI and UC Merced have had a long-standing internship partnership that …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… This is excerpted from the full announcement “ Berkeley Lab Receives Multiple … results this year by assembling a collection of large datasets that will enable scientists to explore and collect … in scale when running on DOE’s  exascale computing systems,” added Kathy Yelick, a professor of electrical …
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