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Mitochondrial ATP generation is more proteome efficient than glycolysis
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PhycoCosm, a comparative algal genomics resource
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Viral dynamics in a high-rate algal pond reveals a burst of Phycodnaviridae diversity correlated with episodic algal mortality
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … is an investment that pays dividends. Microbes are at the core of many environmental processes, and their genetic …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The … thus sharing more ideas, similar to the sharing of genes within a highly recombining microbial population. This … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for … sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their potential … by many, many scientists.”  Using samples of rumen-digested switchgrass, researchers isolated and sequenced DNA from …
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Gut Fungi: Unexpected Source of Novel Chemicals
… The Science Anaerobic fungi, which die in the presence of oxygen, dwell in herbivore guts and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from … lab, O’Malley and her team — notably, first author Candice Swift — verified that the fungi expressed biosynthetic gene …
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Tracking the Origins of Methane-Producing Microbes
… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … collected. The team noticed some of the genomes diverged evolutionarily from other previously discovered genomes. …
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Annotation of metagenome short reads using proxygenes
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Silencing of Dicer‐like protein 2a restores the resistance phenotype in the rice mutant, sxi4 (suppressor of Xa21‐mediated immunity 4)
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Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
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