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Expanding Horizons with the 2025 JGI-UC Merced Internship Cohort
… of Energy (DOE) Joint Genome Institute, a DOE Office of Science User Facility. This year, the 12th JGI-UC Merced cohort consisted of three undergraduate … One of the mentors, postdoc Yumary Vasquez, was herself a program alum from the 2022 cohort.  The UC Merced interns …
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Improving the Cacao Genome and Phytozome
… Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Promoting the Power of Viral Metagenomics
… summarizing the field of viral metagenomics, authored by JGI researchers Lee Call,  Stephen Nayfach and  Nikos … published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since …
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At the Forefront of Terrestrial Virus Research
… Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research opportunities …
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Honey Bee Gut Microbiota Divvy Up Dinner
… But scientists have wondered exactly how the microbial community carries out its helpful metabolism: who’s … findings in the  Proceedings of the National Academy of Sciences . The team focused on the dominant bacterial clades … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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MycoCosm Tutorial
… interactive web-based tools for comparative genomics and community annotation. Presented by Igor Grigoriev, Steven …
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Benjamin Cole
… interpret different light cues by altering their growth program, and on how plants coordinate their gene expression …
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Triggering Morel Fruiting
… led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on … by the black morel, as well as the gene-expression programs encoding the biochemical processes unveiled by …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… discussions, workshops, and informal networking events. JGI will present both a genome center talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your science. …
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The Soil Blooms Green
… green growth appears on top of farmers’ fields: a microbial community that might be quietly improving the soil. Penn …
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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… well in the classroom. This episode, we visit Los Medanos Community College to see EcoFABs in action in Jill …
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