Results

16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Meta-omics survey of [NiFe]-hydrogenase genes fails to capture drastic variations in H2-oxidation activity measured in three soils exposed to H2
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Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant–pathogen interactions in a tree
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RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
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Desert truffle genomes reveal their reproductive modes and new insights into plant–fungal interaction and ectendomycorrhizal lifestyle
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Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales
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Gallionellaceae in rice root plaque: metabolic roles in iron oxidation, nutrient cycling, and plant interactions.
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Extracting Protein-Protein Interactions (PPIs) from Biomedical Literature using Attention-based Relational Context Information
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Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites
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BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … viral diversity. “Although the technical challenges of data analysis at this scale are formidable.” Computational Sieves … together, learned from JGI’s Nikos Kyrpides that his Microbiome Data Science group was also working on RNA virus …
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