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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a … of Science User Facility. Y. lipolytica is a tantalizing microbial factory, capable of turning abundant biomass … CRISPR-Cas9 relies on RNA with a short guiding sequence (20 bp) that directs the endonuclease where to cut, but these …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base 5mC variations in … 5mC is an important piece of how they regulate their genomes, but is not well understood in fungi. A team of … of life, they tracked the evolution of 5mC pathways across 528 species. The researchers found that unlike most flowering …
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Impact of Harvest on Switchgrass Leaf Microbial Communities
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A vast collection of microbial genes that are toxic to bacteria
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Measurement of bacterial replication rates in microbial communities
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Spatial, Temporal, and Phylogenetic Scales of Microbial Ecology
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Missing microbial eukaryotes and misleading meta-omic conclusions
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Maast: genotyping thousands of microbial strains efficiently
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A Plant Root Atlas for Tracking Developmental Trajectories
… collaboratively developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially called out … characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… also collaborated to advance computing infrastructure and analysis. This way, JGI users — both primary, … Podcasts ,  Spotify or wherever you get your podcasts) Microbial ecologist and JGI user Trina McMahon has been … ecosystem works. When she set out to analyze 500 metagenomes from this sample set through the Community Science …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … Sainsbury Institute, by annotating not just one but three genomes for P. pachyrhizi , which are available on MycoCosm … Institute, who works extensively on ASR. “Having the genomes of a crop like soybean ensures that what we bring to …
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PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency
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