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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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Fine-scale evaluation of two standard 16S rRNA gene amplicon primer pairs for analysis of total prokaryotes and archaeal nitrifiers in differently managed soils
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… event will bring together researchers across major ecosystems and disciplines who are developing and applying … studies.  This conference is inspired by the vision of standardized fabricated ecosystems (EcoFABs) designed for precise manipulation and reproducible …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to … on JGI Advisory Committees are outlined in this Code of Conduct. … users and their science including technical capabilities offered, proposal review procedures and the annual meeting. …
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Triggering Morel Fruiting
… A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information … because they influence geochemical cycling in forest ecosystems. By deciphering the fruiting-related decomposition …
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Tanja Woyke Elected to American Academy of Microbiology
… Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in … National Laboratory (Berkeley Lab), Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single … the University of California, Merced. Woyke received a 2014 Berkeley Lab Director’s Award for Exceptional Scientific …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … put together what they called the Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources … aim is identifying chemical compounds that could inhibit microbial methane production. Another effort is in using …
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JGI@25: Studying Sorghum’s Survival Skills
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … in common with certain other cereal crops: It performs C4 photosynthesis, which is the fastest way for plants to … reference genome for Sorghum bicolor . Since then, 2,993 publications, 107 patent applications, and 53 patents have …
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DNA Scanner: a web application for comparing DNA synthesis feasibility, price and turnaround time across vendors
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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Choice Awards . NERSC, JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire … to assemble, for the first time these large environmental  microbial data sets for JGI users, which include projects … in scale when running on DOE’s  exascale computing systems,” added Kathy Yelick, a professor of electrical …
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Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom
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