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JGI Earth Month: Wetlands Work in #TenHundredWords
… work on which she is expanding with her study of microbes in California’s manmade water transport canals. …
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Enlarging Windows into Understanding Gene Functions
… species to answer questions about how they break down plant materials, which could be useful for industrial …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… to develop tools and data hub for NIH program. While the microbes in, on and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, … how the interactions between viruses and their host microbes impact the regulation of global nutrient cycles. …
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The Power of One, Amplified
… between the analyzed community members. The Impact Though microbes help regulate the planet’s nutrient cycles and are … of tens of thousands of previously unknown and uncultivated microbes through metagenomics. Such techniques take … temperatures can reach as high as 80°C (~190°F), yet microbes thrive here. The communities in this extreme …
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Graduate Students Get Thesis Research Opportunity at the JGI
… in wetland carbon cycling and the interactions of plants with their associated microbiomes. Tringe was also … metabolism, work on which she will expand with her study of microbes in California’s manmade water transport canals. … to better understand the ecological importance of virus-microbe interactions,” Rambo added. Both Kaze and Rambo will …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Computational Sieves to Filter Sequences There are more microbes on the planet than particles in a handful of dirt, and viruses vastly outnumber the microbes. Advances in sequencing technologies and … that infect not just crops, animals and humans, but also microbes whose presence or absence can impact the planet’s …
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JGI Early Career Researchers Featured in mSystems Special Issue
… outline more targeted approaches to reconstruct individual microbes in an environmental sample beyond the … into several small pools before sequencing to recover rare microbes. The technique was applied to a recent Nature … DNA with isotopically-labeled compounds to link active microbes with specific metabolic processes. A third approach …
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Danielle Goudeau
… flow cytometry protocols for targeted recovery of specific microbes. …
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iPHoP: A Matchmaker for Phages and their Hosts
… to commandeer. For bacteriophage viruses, these hosts are microbes like bacteria, not humans. With metagenomic … Within the domains of archaea and bacteria, millions of  microbes govern ecosystems. These organisms carry out … microbial communities. One day, these phages could boost plant-microbe interactions, nutrient cycling, or carbon …
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JGI-UC Merced Interns Share Their 2021 Experiences
Impact on Microbial Root … Cross Species Comparison of Plant Single-cell Transcriptomes of Rice and Arabidopsis …
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Streamlining Regulon Identification in Bacteria
… of gene sets associated with functions like stress responses and cellular differentiation. The tough part is …
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Trent Northen
… to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development …
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