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Expanding Virophage Diversity
… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … including over 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” …
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JGI announces second round of 2023 New Investigator awardees
… From left to right: [above] Emma Bell, Mallory Choudoir, Sneha Couvillion, Tobin Hammer, Christina Hazard, Rachel … is eager to work and share our tools with a widening circle of researchers. That’s why twice each year we look for novel research projects — …
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The Structure of CcmP, a Tandem Bacterial Microcompartment Domain Protein from the β-Carboxysome, Forms a Subcompartment Within a Microcompartment
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Elucidating Essential Role of Conserved Carboxysomal Protein CcmN Reveals Common Feature of Bacterial Microcompartment Assembly*
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Identification of Cellulose-Responsive Bacterial and Fungal Communities in Geographically and Edaphically Different Soils by Using Stable Isotope Probing
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Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores
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Large‐scale cultivation of the bumblebee gut microbiota reveals an underestimated bacterial species diversity capable of pathogen inhibition
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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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Bacterial response to the 2021 Orange County, California, oil spill was episodic but subtle relative to natural fluctuations.
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … question, despite of their well-designed sampling and analysis of their data at the time. Following the … of binning methods, we were able to recover Olpidium sequences from the “contaminated” genome data with strong …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis is one of … “Distribution of predominant high-temperature archaeal and bacterial lineages in Yellowstone National Park,” as well as …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have … and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published … a JGI Flagship Genome and the first tree to have its genome sequenced. Having this first genome sequence of a …
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