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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and mentor Juan C. … Sonia Vargas and mentors Tomas Tyml and Frederik Schulz, Eukaryotes in Extreme Environments Theo Loreaux and mentors … part about interning here is that I get to meet a lot of researchers that have been working on genomics data for a very …
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JGI-UC Merced Interns Share Their 2021 Experiences
… virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and … P. hallii Mutant Library … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage …
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Pinning Down a Piece of Photosynthesis
… the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean … experiments at universities and national user facilities, researchers found that this protein detects iron and … Grosjean, the first author of this paper. Grosjean is a research scientist at the U.S. Department of Energy (DOE) …
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Building Sphagnum Genomic Resources
Sphagnome data would enable researchers’ insights on their potential carbon cycling … estimate that they hold about 25 percent of the world’s soil carbon. In high latitudes, sphagnum can also act as a … Under Changing Environments) project, assessing how northern peatland ecosystems respond to increases in …
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Ian Blaby
… of Florida and UCLA he has worked with a wide range of eukaryotic algae, archaea and bacteria with a view to … Wales, Cardiff, Genetics Ph.D. – University of Cambridge., Microbial molecular biology Post-doctoral positions  – … UCLA Molecular Biology Institute Postdoctoral Award for Research Excellence … Education … Selected Publications … …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… or C-fern, specifically has been studied in plant research laboratories and plant biology courses across the … explain the massive size of most fern genomes. A team of researchers put together a chromosomal genome assembly and … is available on the JGI’s plant portal, Phytozome . Researchers hope to have demonstrated the potential of ferns …
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The JGI Data Portal: Improving User Experience
Phytozome , IMG , GOLD , MycoCosm , and PhycoCosm , serve researchers with unique areas of focus and data and … Group. “Our team’s ultimate goal is to allow scientists to search for specific types of data across organisms, enabling them to conduct more complex types of research without requiring them to build their own tools to do …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
Director of DOE’s Office of Biological and Environmental Research “There are two kinds of scientific revolutions,” Ari … with the JGI’s research portfolio, he admitted that boiling that portfolio’s impact down into a succinct message … manager in 2006 when the JGI transitioned from human to microbial genetics. Drell held the role until he retired in …
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JGI@25: Studying Sorghum’s Survival Skills
… genome, the JGI has also continued to collaborate on research to understand how sorghum fares so well in harsh … John Mullet (Texas A & M and Great Lakes Bioenergy Research Center) and his team set out to compare different … in Parlier, California at the UC Kearney Agricultural Research and Extension Center. 2017: The JGI and collaborators …
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Busting the Unbreakable Lignin
… be impossible.  And yet, little chemical clues left some researchers wondering if perhaps the accepted narrative wasn’t quite accurate, and maybe anaerobic fungi living in soils or the guts of livestock were more capable than … components, which requires getting through the lignin.  Researchers led by Michelle O’Malley’s lab at the University …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… that came with crayons in various shades of white. To researchers searching for sequences of RNA viruses in large … metatranscriptome datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then … most of the known RNA viruses have been associated with eukaryotes. Along with the expansion of bacteria-associated …
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Thawing permafrost, microbes, and viruses: Gary Trubl — Part 1
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