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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns … is Vy Duong, and we’re working together on predicting the level of photosynthesis in a model green alga called … model called Tabnet in order to perform regression on the level of photosynthesis giving gene expression values. Sonia …
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The Integrated Microbial Genome Resource of Analysis
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High-resolution phylogenetic microbial community profiling
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A Comparison of Microbial Genome Web Portals
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Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
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Variation in Adult Plant Phenotypes and Partitioning among Seed and Stem-Borne Roots across Brachypodium distachyon Accessions to Exploit in Breeding Cereals for Well-Watered and Drought Environments  
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… organisms called phytoplankton (from the Greek phyto for ‘plant’ and planktos for ‘wanderer’). But they vary across … point to this fundamental observation of cold and warm microbial networks, and just how clear and stark the … co-lead author of the study with Kara Martin. “But these ecosystems are literally melting away.” Driven by climate …
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First Monoploid Reference Sequence of Sugarcane
… crop that very efficiently converts solar energy into plant biomass, which can then be crushed to extract the … be further purified to produce alternative biofuels. A C4 plant like sorghum and maize, sugarcane can grow on … Flagship Genome sequence, and knowing that there was a high level of colinearity between the two crops, which meant most …
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JGI@25: Building a Better Bean
… use Phaseolus as a test model quite frequently for R&D in plant genomics, because it is an inbred dicot,” Schmutz explained, meaning the plant’s reduced genetic diversity makes it easier to … Plant Datasets …
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Training the Next Generation of Talent
… as a first-year graduate student in the Quantitative Systems Biology (QSB) Group under the School of Natural … Ben Cole on a project involving bacteria in Arabidopsis plant roots. At the same time, Lawrence worked with Nicole … the amount of data that’s going to be generated at academic level in a few years as it’s getting closer to producing …
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Emiley Eloe-Fadrosh
… joined the JGI in 2014 to pursue her research interests in microbial ecology and metagenomics. Her current research … of Maryland School of Medicine and her graduate work in microbial oceanography at Scripps Institution of … analysis strategy for stable isotope probing metagenomics. mSystems . 8(4):e0128022. Kelliher JM, et al. 2023. …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… how fungi produce and manage energy at the cellular level. Because the annotations are standardized and span the … species and studying diversity in complex biological systems. By making the tools and data available through … traits from genomic data to understand how biological systems produce and manage energy. By advancing the JGI’s …
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