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Community‐Level Metabolic Shifts Following Land Use Change in the Amazon Rainforest Identified by a Supervised Machine Leaning Approach
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. If a … registers the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … At that time, the field had surveyed many different soil communities for taxonomic diversity. These studies could …
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JGIota: The Algae Nicknamed ‘Chlamy’
… episode is about a tiny, single-celled alga – Chlamydomonas reinhardtii – that’s managed to have a big impact. UC Berkeley plant biologist Sabeeha Merchant … in the Environmental Genomics & Systems Biology Division of the Berkeley Lab Biosciences Area.] …
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JGI Announces 2026 New Investigator Portfolio
… Kumar Gautam, Gareth Gillard, Audrey Goeckner, Jennifer Goff, Sarah Gonzalez Henao, Yang Hai, Julia G. Harenčár, Sarah Hu; [Row … metatranscriptomics and genome assembly to investigate microbial and plant metabolism across diverse ecosystems — …
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The Expanding Universe of Methane Metabolisms in Archaea
… Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … geochemical data, which in turn can help to understand its impact on climate along earth history.” Marker genes for … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence … Choice Awards . NERSC, JGI, ESnet are U.S. Department of Energy Office of Science user facilities. The HPCwire … for JGI users, which include projects looking at wildfire impacts, carbon cycling, and the microbial dynamics in …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … aim is identifying chemical compounds that could inhibit microbial methane production. Another effort is in using …
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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place January 12-16, 2019, in San … your plant genomics research. Click here to download a list of talks relevant to JGI science at PAG XXVII. On January … Genome of Miscanthus 7:45 PM Transcriptome Changes during Leaf Senescence in  Populus 8:03 PM Natural Diversity in  …
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Tomas Tyml
… Tomas uses traditional cultivation methods along with microscopy and genomics to study endosymbiotic associations within microbial eukaryotes. He hopes to broaden our understanding of the roles these associations play in the evolutionary …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … and humans, but also microbes whose presence or absence can impact the planet’s nutrient cycles. While most organism’s …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across … State University campuses for biotechnology education as part of a course-based undergraduate resource experience. Hear …
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Introducing New Members of the JGI User Executive Committee
… JGI User Executive Committee (UEC) : Roland Hatzenpichler of Montana State University, Teresa Pawlowska of Cornell … to help advance JGI efforts aimed at “understanding complex communities and symbioses relevant to the DOI mission.” …
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