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Missing microbial eukaryotes and misleading meta-omic conclusions
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Maast: genotyping thousands of microbial strains efficiently
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and … collaboratively developed for this purpose by the JGI plant comparative genomics data portal  Phytozome and will be … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … Podcasts ,  Spotify or wherever you get your podcasts) Microbial ecologist and JGI user Trina McMahon has been … ecosystem works. When she set out to analyze 500 metagenomes from this sample set through the Community Science …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria … analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from …
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PlantSEED enables automated annotation and reconstruction of plant primary metabolism with improved compartmentalization and comparative consistency
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Comparative transcriptomics and metabolomics reveal specialized metabolite drought stress responses in switchgrass (Panicum virgatum)
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Comparative transcriptomics provides insights into molecular mechanisms of zinc tolerance in the ectomycorrhizal fungus Suillus luteus
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The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … developed a method to correctly identify polyploid subgenomes without needing to know the genomes of their … came up with this new method, Session mentioned that the analysis for determining the evolutionary history of …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… A new view into a symbiosis could offer benefits to address climate change: pulling … to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to better … 188 of which were shared with previous studies in the same system. With the right functional characterization, those …
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Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance
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