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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
More than 20 UC Merced students have contributed to the research of … Zhong Wang and Science Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant … on the Spruce and Peatland Responses Under Climatic and Environmental Change (SPRUCE) project Melanie LeGro (2016 …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
National Laboratory (Berkeley Lab) marked the visit of an esteemed interdisciplinary delegation from the University of Duisburg-Essen (UDE), Germany with the aim of intensifying collaborations in the fields of … SITES Research Center (ACSI), the Centre for Water and Environmental Research (ZWU) of the University of …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based high-performance computing resources, an upcoming hackathon led by the … simulation codes. “JGI is one of the largest producers of environmental genomics data and has a strong reputation in …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy … group for the JGI Plant Program . Her collaborations with the JGI began soon after the JGI was established to … large-scale multi-institutional JGI projects and resulting publications that Grimwood contributed to include: A 2021 …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully … a commonly-used process for studying microbial communities, with results published in the  November 2022 issue …
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Teredinibacter haidensis sp. nov., Teredinibacter purpureus sp. nov. and Teredinibacter franksiae sp. nov., marine, cellulolytic endosymbiotic bacteria isolated from the gills of the wood-boring mollusc Bankia setacea (Bivalvia: Teredinidae) and emended
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Daniel Udwary
Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation of … at Warp Drive Bio, and as a bioinformatics HPC consultant with NERSC. Dr. Udwary co-hosts JGI’s "Natural Prodcast" … (1996) … List available on Google Scholar … Education … Publications …
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality genome and now crop researchers … future sugarcane varieties so that they can adapt to future environmental conditions. Additionally, insights from the …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, … Most of those researchers send their samples in from afar, without ever hearing much about the sequencing lab. So …
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JGIota: Looking Back at Methane-Making Microbes
We count on livestock for food and fiber, but raising these animals also produces an atmosphere-warming gas: methane. …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to … a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial crops such as … (and by extension similar taxa) are faced with pronounced environmental fluctuations. New findings from this line of …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help or harm plant host health. … genomes of fungi that colonize Arabidopsis thaliana roots with genomes from other plant-associated fungi. Their … the Genomic Science Program, the Office of Biological and Environmental Research in the US DOE Office of Science (to …
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