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… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is … Deep learning algorithms can vectorize faces… … so, why not proteins?         …

… an environment. For example, SIP experiments can show how soil microbes cycle nitrogen and carbon, or how freshwater … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required … this was the first workshop of its kind on SIP metagenomics,” Malmstrom said.  Increasingly, efforts like …

… of microbial communities based on their metagenome sequence, in the context of reference isolate genomes … of fungi. Mycocosm enables users to navigate across sequenced fungal genomes, and to conduct comparative and … resource hub that provides access to publicly available sequenced algal genomes and genome annotations generated by …

… (2023) Unraveling the functional dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. … al. (2017) Protein structure determination using metagenome sequence data. Science   355(6322):294-298 Paez-Espino D. et … al. (2015) Microbial species delineation using whole genome sequences. Nucleic Acids Res. 43(14):6761-71 Kyrpides NC et …

… the foundation for a large-scale CSP proposal submission. Sequence requests should not exceed 3 Tb in total. Proposals …

… in Florida to discuss a JGI pilot project involving soil sampling in the Florida Everglades to help train the … samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed the soil samples, the JGI offered 7 … a deeper understanding of both the research process and metagenomics while legitimately contributing to the body of …

… fungal lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a … validate how mycorrhizal fungi play an integral role in soil carbon storage. Summary There are three types of fungal … relationships outside of the root cells) lineages. To learn why, researchers analyzed 135 fungal genomes representing …

… is offering a five-day workshop on Microbial Genomics and Metagenomics. Details: mgm.jgi.doe.gov   This highly … workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to the wealth of public microbiome sequence data and enables the user to analyze these data …

… water resources and restoring and maintaining healthy soils – are at the heart of sustaining food and bioenergy … producing bio-based plant nutrition products that target soil enrichment, is partnering with the U.S. Department of … advantages for farmers concerned with improving sustainable soil management practices. Read the full release from …