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Natural Prodcast Episode 21: Elizabeth Parkinson
… The genes are pretty much 100% identical. We don't know why one is expressed over the other. As far as whether we're … usually serve as dimers, and then they will bind to certain sequences of DNA. And when they bind to those certain … all other kind of examples that have gene clusters with associated molecules that have these [penicillin binding …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute … Schmutz is the Plant Program Lead at the JGI. Sarah:  Why is a resource like this important to the field of plant … We looked at the plant’s response in the aboveground and root tissues. The striking thing we found was related to …
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Publication Policy
… (see Auspice Statement below) for the generation of sequence or metabolomic data, DNA synthesized, and any other …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , … framework provided by these high quality reference genome sequences could help researchers better understand related … expanded. Along with NLRs, the diversified peroxidases are associated with adaptation strategies in  Marchantia  and in …
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Analysis of Leaf and Root Transcriptomes of Soil-Grown Avena barbata Plants
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Environmental Genomics Group
… Our research focuses on the assembly of metagenomic sequence data into microbial genomes, which is of … Profile HMM search across all IMG metagenomes, capturing sequence diversity for proteins of interest. … better understanding of complex ecosystems within hard to sequence and assemble samples, such as those from soil and …
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Visual Comparative Omics of Fungi for Plant Biomass Deconstruction
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CAZome comparison in relation to host plant for selected Sordariomycete and Dothidiomycete plant pathogenic fungi
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Synthetic Biology Lab
… We focus our efforts on integrating database mining and sequence design with scaling the production of large, … developing methods for converting digital information from sequence databases into biotechnological or environmental …
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The Fungi That Survive In Antarctica
… Black fungi are microscopic and mighty. They survive everywhere …
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JGI@25: Strengthening Soybean
… impressive environmental and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has desirable properties as … first legume species with a published complete draft genome sequence. At the time, the vital global source of both …
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Fungus Fuels Tree Growth
… organic matter, or as an endophyte, living between a plant’s root cells. The fungus is almost always found among and … in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, … This work was supported by the Plant-Microbe Interfaces program at the Oak Ridge National …
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